Protein Info for HSERO_RS10155 in Herbaspirillum seropedicae SmR1

Annotation: antiactivator of flagellar biosynthesis FleN protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF01656: CbiA" amino acids 21 to 223 (203 residues), 28.1 bits, see alignment E=8.7e-11

Best Hits

KEGG orthology group: K04562, flagellar biosynthesis protein FlhG (inferred from 100% identity to hse:Hsero_2028)

Predicted SEED Role

"Flagellar synthesis regulator FleN" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISW9 at UniProt or InterPro

Protein Sequence (266 amino acids)

>HSERO_RS10155 antiactivator of flagellar biosynthesis FleN protein (Herbaspirillum seropedicae SmR1)
MLERPVPRLFTFFSVLAEEDKSAMLINLAASLAQAKHSVLVIDGDVATTGLLTRIGLRHD
VATLQEVARMERAPREATRMLPEGFSMARIARRSVPSASDPQAGQLAEIFDSLIEQAEIT
LVNGVLSADQSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT
EAEARTVYANMAQAASRYLAAQLNYLGAIPADDHIRRATGQGRAVMDVFPFATAALAFQR
LSKKFTAAESARSTYGMATDGASLGV