Protein Info for HSERO_RS09555 in Herbaspirillum seropedicae SmR1

Annotation: LacI family transcription regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF00356: LacI" amino acids 18 to 61 (44 residues), 66 bits, see alignment 4.2e-22 PF00532: Peripla_BP_1" amino acids 75 to 316 (242 residues), 97.5 bits, see alignment E=2.1e-31 PF13407: Peripla_BP_4" amino acids 76 to 289 (214 residues), 49.1 bits, see alignment E=1.2e-16 PF13377: Peripla_BP_3" amino acids 182 to 340 (159 residues), 96.7 bits, see alignment E=3.5e-31

Best Hits

KEGG orthology group: K06145, LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor (inferred from 100% identity to hse:Hsero_1914)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IS78 at UniProt or InterPro

Protein Sequence (340 amino acids)

>HSERO_RS09555 LacI family transcription regulator (Herbaspirillum seropedicae SmR1)
MSHKPEPPAMPTRAVTKEDVARAAGVSHITVSRVINSPEKVSPATRERVEAFIASMGYIP
NLLAGGLASRRTRIVAAIVPTISHSIFAETLRGLSEQLCMQGYQLLLGQTNYSEEAETGL
VEVFIGRRVDGLVLTGVQHSPMTRQRLKAAGIPVVETWDLTDTPIDMLAGFDNHAAGRAM
GDYLYQKGYRRMAFVGGDDPRGMARVAGLRESLRHHGAAEPVHLVMPMGAFLQAGREAIG
RLLTQHPEVDAAFFSNDVIAAGAALECARRGIAVPGRIALAGFANLEIATEVLPALTTVQ
ISAHQIGLTAAEMLLTRFDGDPLDQAVHDLGYSILERDST