Protein Info for HSERO_RS09035 in Herbaspirillum seropedicae SmR1

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 107 to 132 (26 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details PF01810: LysE" amino acids 16 to 190 (175 residues), 57.3 bits, see alignment E=7.5e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1810)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IRJ6 at UniProt or InterPro

Protein Sequence (199 amino acids)

>HSERO_RS09035 lysine transporter LysE (Herbaspirillum seropedicae SmR1)
MIETLLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHMLGITFGFGVLLALCAFGI
GELVIAVPQLVLLLKAMGCAYLLYLAWQLRRMGVAGAGERAAQPMSFGAAALFQFANPKA
WVMAVTGASAFMPMLHKLPGALAILVYCLVFCAINLPCVSVWAGAGAVLRRYLERPLWRM
AFAAVMVLLTLYSALAIWF