Protein Info for HSERO_RS08630 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details PF06271: RDD" amino acids 6 to 153 (148 residues), 71 bits, see alignment E=6.5e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1731)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQY3 at UniProt or InterPro

Protein Sequence (168 amino acids)

>HSERO_RS08630 membrane protein (Herbaspirillum seropedicae SmR1)
MPDLTTPSLRRRLSSMLYESMLLFGVLFISGWLFSTLLQQRHALYLRHGLEMWLFLVLAL
YFIWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQ
WTLVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLVDVTAMAATSKS