Protein Info for HSERO_RS08370 in Herbaspirillum seropedicae SmR1

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 192 to 213 (22 residues), see Phobius details PF02203: TarH" amino acids 4 to 173 (170 residues), 30.9 bits, see alignment E=3.8e-11 PF12729: 4HB_MCP_1" amino acids 6 to 175 (170 residues), 32.4 bits, see alignment E=1e-11 PF00015: MCPsignal" amino acids 331 to 486 (156 residues), 173 bits, see alignment E=8.1e-55

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to hse:Hsero_1683)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQT5 at UniProt or InterPro

Protein Sequence (534 amino acids)

>HSERO_RS08370 chemotaxis protein (Herbaspirillum seropedicae SmR1)
MSFLQKLRVSARLALLSALFLAAMLAMVSWNIVSLRSISAQERQMYHDRIEPMQKLNTAA
LAMAIHFRRGYSYIYPNAGDPKSRIGTRALNQKAEAQIQEAFDYLQGAEKTAQLAPLVSA
LNQAWPAYKESFQRLMDKADQDDQAGALAELQKTTDPAHVKLRDVFLQVVKLYDQSVQDH
MNVSAEGVDSTAWRLVALLALTVALGVAFSVVIQRSITRQLGGEPDYAVDIAQAIADGDL
ATQVRLRAGDQGSVLAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGNLNLSQRTEEQ
ASNLEETAASMEELTSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVVDLMGDIASSS
ARIKEIIVVIDAIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAHRSAQAAREIK
TLIEDSVSKVDAGYSKVQEAADAIGEVVTQVRHVSGLVNEIGVSTQEQTQGISQVGTAVQ
QLDDVTQQNAALVEQSAAAAESLSAQASKLLDLMGAFKLAGREEQALHAAPAVA