Protein Info for HSERO_RS07895 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00496: SBP_bac_5" amino acids 65 to 435 (371 residues), 326.6 bits, see alignment E=1.1e-101

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_1568)

Predicted SEED Role

"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) or Sex pheromones in Enterococcus faecalis and other Firmicutes (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQ35 at UniProt or InterPro

Protein Sequence (523 amino acids)

>HSERO_RS07895 ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
LTRLLAIALTGAALAAAADAAHAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQ
NDYNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATF
AGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAVIG
TGPYKFVSYTPGDRVVMQRNDDYWNGKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVS
VSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAM
SLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLADAGFPDGFK
LTIHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWAAYSSRANKNEFAVSVLAWGNG
TGEASYALVNVLGSVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKT
VSEEVGVIPLYHYQNIWAAKKGLKVTPISSDRTTAMMVTEDKK