Protein Info for HSERO_RS07685 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 705 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07715: Plug" amino acids 65 to 168 (104 residues), 82.4 bits, see alignment E=4.8e-27 TIGR01783: TonB-dependent siderophore receptor" amino acids 67 to 705 (639 residues), 400.1 bits, see alignment E=1.1e-123 PF00593: TonB_dep_Rec" amino acids 239 to 674 (436 residues), 225.2 bits, see alignment E=4.5e-70 PF14905: OMP_b-brl_3" amino acids 401 to 685 (285 residues), 29.3 bits, see alignment E=7.6e-11

Best Hits

Swiss-Prot: 43% identical to CNTO_PSEAB: Metal-pseudopaline receptor CntO (cntO) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to hse:Hsero_1528)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPZ7 at UniProt or InterPro

Protein Sequence (705 amino acids)

>HSERO_RS07685 membrane protein (Herbaspirillum seropedicae SmR1)
MKMTALRAAVLGALALGQTPSVSWAADAAGKQEGDLGEIVVTGQGERQQYRQSSTSSATR
TETPLQELPQSVQVVSRQLIDDLAATRLDDVLLYVSGVARQNNFGGLWDNYSIRGFSGSE
NGGMNILWNGFASNRGYAPPRDMANVESVDFLKGPAAALYGNSEPGGTINVVTKKPQFKS
ANALDLSIGSNDAYRSAVDSTGALSSTVAYRLNAAMEHKGSMRDQVRSEREFFAPAFTWL
LTENTILNYEGEFLRQKAPLDRGIVAVNGNAGVLPVSRFLGEPNDGDIKMQNQNHLLTLE
QRLNENWHLRTGIFHKEGSLDGYSTEAFALQADNATLRRQRRYRDYSWHDTSLQAEIGGK
FATAGVGHEVLVGTEVDWLTLDQRMLRINPSNVAPYAVNIYNPVYGQAQPTPTANTDTSE
RQISTGLYLQDQLSLSERWRLLAGVRADAFRSTLNNLRNGAVTRQDKHAYSPRLGLTYLL
TPSWSVYVSASKSFRPNSGSDVSGNAFSPETSRAAEAGLKFQSEDKRSGATLAVFDITKQ
NVLTTDPANPNFSIAAGEVRSKGVELDANARLGHHWRVTGNLAYTDAYVSRDNTLPVGSR
LVNIPRSSASLLAVFEDADAHGAPYGVGGGLNYVGRRTGDQAGSFMLPSYVTARALAYWQ
FTPKMKLSLDVNNLFNKRYYSSSYNSLWIMPGDERNATLALNIKF