Protein Info for HSERO_RS07475 in Herbaspirillum seropedicae SmR1

Annotation: nitrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 120 to 140 (21 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 241 to 260 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 98 to 266 (169 residues), 93.6 bits, see alignment E=6.3e-31

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to hse:Hsero_1486)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPV5 at UniProt or InterPro

Protein Sequence (272 amino acids)

>HSERO_RS07475 nitrate ABC transporter permease (Herbaspirillum seropedicae SmR1)
MTQYTQTATPTAQESAMPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSV
SMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIE
FFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLG
AGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTE
WVFVGIIALGILGYLFDRVLRVATRKLLARYL