Protein Info for HSERO_RS07215 in Herbaspirillum seropedicae SmR1

Annotation: preprotein translocase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 TIGR02292: yecA family protein" amino acids 12 to 189 (178 residues), 123.1 bits, see alignment E=4.8e-40 PF03695: UPF0149" amino acids 13 to 191 (179 residues), 135.1 bits, see alignment E=3.3e-43 PF02810: SEC-C" amino acids 209 to 226 (18 residues), 42 bits, see alignment (E = 6.5e-15)

Best Hits

KEGG orthology group: K07039, uncharacterized protein (inferred from 100% identity to hse:Hsero_1435)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPD1 at UniProt or InterPro

Protein Sequence (233 amino acids)

>HSERO_RS07215 preprotein translocase (Herbaspirillum seropedicae SmR1)
MHLDQPLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGS
RPEDTPKFKNGKEAERITSLIARSMNEIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWA
WGFWEGIQLRAEQWDEIFHSNLAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEA
AIPHIHRYWAPKRKSAVEQVQRDAPKTGRNDPCPCGSGKKYKKCCGADTESEE