Protein Info for HSERO_RS07035 in Herbaspirillum seropedicae SmR1

Annotation: peptidase M48

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF00595: PDZ" amino acids 98 to 168 (71 residues), 24.6 bits, see alignment E=4e-09 PF17820: PDZ_6" amino acids 130 to 162 (33 residues), 29.9 bits, see alignment 6.1e-11 PF01435: Peptidase_M48" amino acids 209 to 352 (144 residues), 33.4 bits, see alignment E=6.3e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1400)

Predicted SEED Role

"Putative Zn-dependent protease, contains TPR repeats"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IP96 at UniProt or InterPro

Protein Sequence (369 amino acids)

>HSERO_RS07035 peptidase M48 (Herbaspirillum seropedicae SmR1)
MENRMLVSPLPPSQWQKLKTLAALAPLALLAACATQEPTVSSPPSTTWPTATAQPPKPAA
TTPQQQQLQELIAQQDRLYRVAAPLLTSNAQLCRGNARNLLGFTAKNRYSFPIEYADTAR
SLGYDDRLQVTGVLPGSGAQQAGIQRGDLLVSVAGKPMPQGTDAERQAAVLLSPLVVKKA
PIALGVQRNGQTSTVNVPLTFACAFSIELGNADNVNTYADGRRVLITRGMLKFTQSDDEL
AYLIAKDMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTAGTAGIRVYPQDLDAAAD
TLSLYLLARAGYSIDNVPAFWKRLAEQYPASVPNGYTALHPSTTYRLAMIEKVTQIVKAK
QEAGKPLVP