Protein Info for HSERO_RS06890 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 34 to 57 (24 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 158 to 181 (24 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details amino acids 225 to 242 (18 residues), see Phobius details amino acids 248 to 265 (18 residues), see Phobius details amino acids 286 to 311 (26 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 383 to 405 (23 residues), see Phobius details amino acids 426 to 446 (21 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details PF07690: MFS_1" amino acids 42 to 434 (393 residues), 98.2 bits, see alignment E=2.4e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1372)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IP68 at UniProt or InterPro

Protein Sequence (485 amino acids)

>HSERO_RS06890 MFS transporter (Herbaspirillum seropedicae SmR1)
MTTSSSAPPAQRQAQPQPASVASWGELLGRRHGWCAVALTGGVAMHAINVHIVTTILPSV
VRDIGGLDYYAWNVTLFVVTSIIGSTLTGKLLARLGARAAYLLALAVFGAGALVCAGAGS
MGWMLAGRAVQGVGGGLLASLGYALIPLVFEQRLWSRAIALVSGMWGVSTLLGPAVGGLF
AAGGHWRLAFFALLPLLLLQSVLVVRQLGPGRVRAQSDAVQAMPLGRIFLLALSVLLVAL
AAQTGQAWSALACVLGGAGLGAWVARIDLRHRISLLPRDGYRLSTVMGCVFACISLLVMA
SCVEIFVPYFLQSLHGYAPLAAGYAAAAMAGGWSVGSLVGSGRSAQAAARMIRMGPWLML
LGLLALAALLPASLLAAGVVADVLIVLALAAAGLGIGVGWPHLVARAMQAARPGEENLTS
SAITTVQLYAMAMGAALAGLIANQAGLGMPGGVDGARQAAGVLFAVFAVAPALAIMLTRR
LAARD