Protein Info for HSERO_RS06775 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 19 to 39 (21 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 242 to 270 (29 residues), see Phobius details amino acids 282 to 305 (24 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 117 to 329 (213 residues), 48.2 bits, see alignment E=4.1e-17

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 100% identity to hse:Hsero_1350)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IP46 at UniProt or InterPro

Protein Sequence (344 amino acids)

>HSERO_RS06775 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MNLQIVALLGQDGITNGAIYALLALSIVLVFTVTRILLIPQGEFVSFGALTMGMMQNGQP
LTVAWLLVAMCLGACAFDLYDMWRTSRRRPSLWLPAKLAYAAVVGGVALSVNFATLPMLV
QIAMTLLLLVPLGPLMYRMAFQPIATASPLVLLIVSIAVHVALVGVALLVFGPEGARTAP
FTEAALELGSLRLSSQALWVICVSLLLIVGLFLMFERTLYGKALRAAALNRMGARLMGIS
PVFAGKAMFLLASLIGVMSGVLIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPLAAAGA
LAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLTTRHVEEEE