Protein Info for HSERO_RS06130 in Herbaspirillum seropedicae SmR1

Annotation: 4-hydroxybenzoyl-CoA thioesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 TIGR02799: tol-pal system-associated acyl-CoA thioesterase" amino acids 8 to 137 (130 residues), 157.3 bits, see alignment E=2.3e-50 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family" amino acids 11 to 132 (122 residues), 106.9 bits, see alignment E=7.9e-35 PF13279: 4HBT_2" amino acids 17 to 137 (121 residues), 62 bits, see alignment E=7.7e-21 PF03061: 4HBT" amino acids 22 to 103 (82 residues), 60.5 bits, see alignment E=1.6e-20

Best Hits

KEGG orthology group: K07107, acyl-CoA thioester hydrolase [EC: 3.1.2.-] (inferred from 100% identity to hse:Hsero_1221)

Predicted SEED Role

"4-hydroxybenzoyl-CoA thioesterase family active site" in subsystem Ton and Tol transport systems

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.2.-

Use Curated BLAST to search for 3.1.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INR7 at UniProt or InterPro

Protein Sequence (144 amino acids)

>HSERO_RS06130 4-hydroxybenzoyl-CoA thioesterase (Herbaspirillum seropedicae SmR1)
MSAASSPFDWKIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQQLAATTGAIF
VVKNTNVDYLSPARLDDELRLTVVVEKLRNASMQFIQEAWRLPSGDGEPRLLARGSITVV
CVDQATFRPRPIPDELLTCLKKTT