Protein Info for HSERO_RS06105 in Herbaspirillum seropedicae SmR1

Annotation: OmpA/MotB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR02802: peptidoglycan-associated lipoprotein" amino acids 68 to 171 (104 residues), 138.4 bits, see alignment E=4.1e-45 PF00691: OmpA" amino acids 70 to 165 (96 residues), 76.9 bits, see alignment E=6.4e-26

Best Hits

KEGG orthology group: K03640, peptidoglycan-associated lipoprotein (inferred from 75% identity to mms:mma_2468)

Predicted SEED Role

"18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (172 amino acids)

>HSERO_RS06105 OmpA/MotB (Herbaspirillum seropedicae SmR1)
MRTISTFALIVSSAVLLAACSSTKLDDKANAPVQTGASNGADTRTVGTVNAGSVDPLNDP
QGVLAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVIIQGNTDDRGGAEYNLALG
QKRAEAVRKALVLLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAYQ