Protein Info for HSERO_RS06090 in Herbaspirillum seropedicae SmR1

Annotation: restriction endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF14338: Mrr_N" amino acids 6 to 91 (86 residues), 109.4 bits, see alignment E=1.2e-35 PF04471: Mrr_cat" amino acids 161 to 280 (120 residues), 127.4 bits, see alignment E=4.3e-41 PF13156: Mrr_cat_2" amino acids 193 to 284 (92 residues), 30.6 bits, see alignment E=4.6e-11

Best Hits

KEGG orthology group: K07448, restriction system protein (inferred from 100% identity to hse:Hsero_1214)

Predicted SEED Role

"Mrr restriction system protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INR1 at UniProt or InterPro

Protein Sequence (306 amino acids)

>HSERO_RS06090 restriction endonuclease (Herbaspirillum seropedicae SmR1)
MTIPDYQSIMLPLLRLTGDTKEHRFRDLVEQLADEFSLTDAQRAEMLPSGTAPLFDNRAG
WARTYLKQAGLLQSAKRGVLQITERGSDLLSKPPVKIDVEFLRRYQEFREFQVRRRTKEV
DTPDAPNATVASTDQTPEDALAAAYQTLRSNLEAELLDQVRSMSPAFFERLVIDLLVSMG
YGGSRQDAASAVGKSGDGGIDGIIKEDRLGLDVIYVQAKRWEGTVGRPEIQKFAGALQGQ
RANKGVFITTSSFSSEAEEYTNIISSKIILLDGRQLAKLMVDHNVGVAQVGLYEIKKIDS
DYFEGE