Protein Info for HSERO_RS05885 in Herbaspirillum seropedicae SmR1

Annotation: pyrophosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 125 to 153 (29 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 240 to 258 (19 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 297 to 320 (24 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 383 to 401 (19 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details amino acids 466 to 486 (21 residues), see Phobius details amino acids 498 to 518 (21 residues), see Phobius details amino acids 570 to 589 (20 residues), see Phobius details amino acids 595 to 617 (23 residues), see Phobius details amino acids 661 to 680 (20 residues), see Phobius details TIGR01104: V-type H(+)-translocating pyrophosphatase" amino acids 9 to 677 (669 residues), 876.3 bits, see alignment E=9.8e-268 PF03030: H_PPase" amino acids 15 to 673 (659 residues), 916.8 bits, see alignment E=4.3e-280

Best Hits

KEGG orthology group: K01507, inorganic pyrophosphatase [EC: 3.6.1.1] (inferred from 100% identity to hse:Hsero_1172)

Predicted SEED Role

"Pyrophosphate-energized proton pump (EC 3.6.1.1)" in subsystem Phosphate metabolism (EC 3.6.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.1

Use Curated BLAST to search for 3.6.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1R8 at UniProt or InterPro

Protein Sequence (682 amino acids)

>HSERO_RS05885 pyrophosphatase (Herbaspirillum seropedicae SmR1)
MKMALALWFAIACGIVAVIYGLVSRNWILKQDPGNPRMQDIALAIQQGASAYLARQYRTI
AMVGVVLLILIALIPGLGWLTAIGFLLGAVLSGACGFIGMNVSVRANVRTAQAATQGMNQ
ALAVAFRGGAITGMLVVGLGLLGVSLFFWVLYIYGQGRAASLHDAIQPLIGLAFGASLIS
IFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFET
YVVTLVATMLLGSLMLTGMETLAVLYPLALGGVSILASIVGCAMVKAQPGKKIMSALYTG
LWWAAGLSLIGFAVVTWLLLPPPLRVPLMGAAVVGIALTGLMVYITEYYTGTDFKPVQHI
AQASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAILLSYWLAGLYGIAIAATSMLSMAGIV
VALDAYGPITDNAGGIAEMSGLPESVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLF
ADYTHALESVGKSASFDLSSPAVIIGLFIGGLIPYLFGAMAMEAVGRAAGAVVVEVRRQF
SEIKGIMDGSGRPEYDKAVDMLTSSAIREMILPSLLPVIVPILVGMLLGPSALGGLLMGT
IVTGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGSEAHKAAVTGDTVGDPYKDTAGPAVN
PLIKIINIVALLLVPLLPAMPT