Protein Info for HSERO_RS05775 in Herbaspirillum seropedicae SmR1

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 97 to 111 (15 residues), see Phobius details PF00126: HTH_1" amino acids 5 to 64 (60 residues), 72.1 bits, see alignment E=3e-24 PF03466: LysR_substrate" amino acids 89 to 296 (208 residues), 114.2 bits, see alignment E=5.9e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1151)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1P7 at UniProt or InterPro

Protein Sequence (322 amino acids)

>HSERO_RS05775 LysR family transcriptional regulator (Herbaspirillum seropedicae SmR1)
VSFNLQQLEMFNAIVSAGSLGRAAALLNLTQPALSRAIKRLEESVGGALFERHTKGMHLT
VLGQALLPHAMSLQREAQQAREELDAIRGLAKGVIKVGAVGSIASLVLPLAVRGVLDKWP
NLRVEIIEGVWDRLVEGLLTHEIDLALSTSGGQTEGVAAIADCCWTDLSYVVAAPDHPLR
QQGRIALEQTLGQRWALTPKGTGPYLHVQETFARHGLPMPEIAVESRSVTVLKSLVARCG
FIGWMSGPMFDTERQAGVIVALEVAGLDAPRTLTAFRRRQGILPAPAARLLDELRHLTGS
LAPTQRAGAASPSATAIAPIFP