Protein Info for HSERO_RS05560 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 47 to 287 (241 residues), 231.2 bits, see alignment E=7.2e-73 PF03480: DctP" amino acids 48 to 320 (273 residues), 242.2 bits, see alignment E=3.7e-76

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1108)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1K4 at UniProt or InterPro

Protein Sequence (348 amino acids)

>HSERO_RS05560 ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
MNQDNSKPGKTSVSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKR
AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI
VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAAD
LKGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV
QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDL
QGKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG