Protein Info for HSERO_RS05530 in Herbaspirillum seropedicae SmR1

Annotation: prolipoprotein diacylglyceryl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 126 to 144 (19 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 204 to 221 (18 residues), see Phobius details amino acids 236 to 259 (24 residues), see Phobius details TIGR00544: prolipoprotein diacylglyceryl transferase" amino acids 5 to 265 (261 residues), 250.1 bits, see alignment E=1.4e-78 PF01790: LGT" amino acids 9 to 257 (249 residues), 251 bits, see alignment E=5.3e-79

Best Hits

Swiss-Prot: 77% identical to LGT_JANMA: Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase (lgt) from Janthinobacterium sp. (strain Marseille)

KEGG orthology group: K13292, phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC: 2.-.-.-] (inferred from 100% identity to hse:Hsero_1102)

Predicted SEED Role

"Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)" (EC 2.4.99.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.-.-.-

Use Curated BLAST to search for 2.-.-.- or 2.4.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1J8 at UniProt or InterPro

Protein Sequence (278 amino acids)

>HSERO_RS05530 prolipoprotein diacylglyceryl transferase (Herbaspirillum seropedicae SmR1)
MLVHPMPDPIAVHIGPLAVHWYGLMYLLAFAQFIALGRLRIKQPHIAAVGWKKEDLDDML
FYGVLGVVLGGRLGEILFYNPAYYFAHPADMIAVWKGGMSFHGGFLGVMLAMYLWGRKRG
RNLMDIMDFIAPMVPLGYAAGRLGNFINAELPGRPADPSLPWAMIWPNVDNIPRHPSPIY
QMLVDGILLFIILWIFSRHSRPRMAVAGMFSLLYGCARFFTEYFRVPDYEVHFGGITISA
GQMLSVPMIVLGIILLVLAYRLRQQAQAPAEPALAGKK