Protein Info for HSERO_RS05365 in Herbaspirillum seropedicae SmR1

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 38 to 61 (24 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details amino acids 299 to 318 (20 residues), see Phobius details amino acids 324 to 347 (24 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 387 to 405 (19 residues), see Phobius details PF07690: MFS_1" amino acids 42 to 373 (332 residues), 146.7 bits, see alignment E=8.5e-47 amino acids 245 to 406 (162 residues), 38.6 bits, see alignment E=6.3e-14 PF00083: Sugar_tr" amino acids 75 to 207 (133 residues), 29.8 bits, see alignment E=3e-11

Best Hits

Swiss-Prot: 31% identical to SOTB_SALSV: Probable sugar efflux transporter (sotB) from Salmonella schwarzengrund (strain CVM19633)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1072)

Predicted SEED Role

"FIG00725189: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J134 at UniProt or InterPro

Protein Sequence (422 amino acids)

>HSERO_RS05365 transporter (Herbaspirillum seropedicae SmR1)
MSTPGIIEAPLTETAAPATAPAPTAHKAGQEAPANWSGIASLALGVFSLVTAEFLPASLL
TAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLMLSLLLLVSNILAV
TAPNLPVLLVARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPI
GAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALL
AVLLVVSGHFAGFTYIRPLMEQITHMSVTTISAVLLGYGVGGFFGNFAGGFIAERSERYA
IVSGGALIALLAASLWVAGSSPVVAAVAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGG
LLVAAFQVAIASGAIGGGVLVDHVGALGGPIFAVVAITLGTLLTLRYGPRGGGAPVAGNA
HF