Protein Info for HSERO_RS05145 in Herbaspirillum seropedicae SmR1

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 106 to 133 (28 residues), see Phobius details amino acids 146 to 163 (18 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 337 to 357 (21 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 344 (318 residues), 57.7 bits, see alignment E=5.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1028)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0Z0 at UniProt or InterPro

Protein Sequence (390 amino acids)

>HSERO_RS05145 amino acid ABC transporter permease (Herbaspirillum seropedicae SmR1)
MTSGSSSSSAAAPHRIRNATRATMAQFFVNGATFATWGVLIPSVKERFALSDAVLSLAML
AVAGGALLTMGQSGKWIARVGSARALRQVGILYAATLLLIPLAPQFWMLVLLLLVFGSAM
AAFDVAMSVQAALVEGQRTRPIMSTLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVTL
AVSLSIGPFALPDEVHDSAATPHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRD
VAQSPMAWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSP
LATLGGLLLSGLGIANLMPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAE
HLGLRLSFVGVALVMTVVALFGGKAVRRFI