Protein Info for HSERO_RS04865 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 94 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 54 to 71 (18 residues), see Phobius details amino acids 77 to 92 (16 residues), see Phobius details PF09928: DUF2160" amino acids 7 to 94 (88 residues), 139.2 bits, see alignment E=2.2e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0971)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0T3 at UniProt or InterPro

Protein Sequence (94 amino acids)

>HSERO_RS04865 membrane protein (Herbaspirillum seropedicae SmR1)
MGNALSWMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLT
AAYINLAWVGLTDKDQWYAVALGFVALVLIMRKG