Protein Info for HSERO_RS04740 in Herbaspirillum seropedicae SmR1

Annotation: dienelactone hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF02129: Peptidase_S15" amino acids 62 to 202 (141 residues), 24.9 bits, see alignment E=1.6e-09 PF01738: DLH" amino acids 107 to 272 (166 residues), 35 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0947)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0Q9 at UniProt or InterPro

Protein Sequence (306 amino acids)

>HSERO_RS04740 dienelactone hydrolase (Herbaspirillum seropedicae SmR1)
MHTREHRPGLRRPRRMPLPLLLAATLVAGLGAANGAYAALIEQQIDVPVSLKNMYGKPVE
QKMRVTIWRDDANPAPAPILVLNHGRAAEAAGRANLGRARFTVASRFFVRYGFVVAVPTR
VGYGVTGGDDLEDAGGCNSRFYPPVYEAAAQQTIATINAVKALPGTDGARVVVVGQSFGG
TTAITVASHQVPGLKAAINFAGGGGGNPKTHPQQPCGPQKLEQMFGDYGKSSQVPTLWIY
TENDQWMGPTYPRQWFNAFQAAGGKGEFVLFPPHGEDGHLLFARFPQSWQPRVAEFLEQQ
GFTAHR