Protein Info for HSERO_RS04550 in Herbaspirillum seropedicae SmR1

Annotation: capsid protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 TIGR01551: phage major capsid protein, P2 family" amino acids 6 to 336 (331 residues), 367.1 bits, see alignment E=3.9e-114 PF05125: Phage_cap_P2" amino acids 8 to 337 (330 residues), 506.3 bits, see alignment E=1.9e-156

Best Hits

Swiss-Prot: 54% identical to CAPSD_BPP2: Capsid proteins (N) from Escherichia phage P2

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0907)

Predicted SEED Role

"Phage major capsid protein" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J087 at UniProt or InterPro

Protein Sequence (347 amino acids)

>HSERO_RS04550 capsid protein (Herbaspirillum seropedicae SmR1)
MKNQTRVAYNAYTTRLASLNDVAGGAVHSTFSVEPSVQQTLEDKMQESSEFLGSINIIGV
DELEGEKIGLGVSGPVASRTDTSGDKRRSTRDASAMSNRRYRCEKTNFDTHITYAKLDAW
AKFKDFQTRVATAILKRQALDRIMIGFNGVKVAADTNLAQYPLLQDVNKGWLQQIREHSP
QRVMGLVGPELPGKVVIGSGEGADYANLDAAVYDAVTNLDPWYQDDTSLVVIVGRELLHD
KYFPMINKDNKPTEALATDIIVSQKRIGGLPAVRVPSFPANAMLITRLDNLSIYFQNGGR
RRRVVDEPKADRIENYESSNDAYVIEDEGLAALVENVVLQDAPKGAA