Protein Info for HSERO_RS04485 in Herbaspirillum seropedicae SmR1

Annotation: tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 PF09684: Tail_P2_I" amino acids 1 to 138 (138 residues), 184.9 bits, see alignment E=3.5e-59 TIGR01634: phage tail protein I" amino acids 1 to 138 (138 residues), 202.9 bits, see alignment E=9.1e-65

Best Hits

Swiss-Prot: 58% identical to BPI_BPP2: Baseplate protein I (I) from Escherichia phage P2

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0894)

Predicted SEED Role

"Phage tail fibers"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J074 at UniProt or InterPro

Protein Sequence (204 amino acids)

>HSERO_RS04485 tail protein (Herbaspirillum seropedicae SmR1)
LPPNTTPLERALARACAELAETPVPLRDLWSPDRCPVELLPFLAWSFSVDRWDDGWSESI
KRGTIKAARYIHQHKGTIAAVRGVVESLGYLIKITEWWQTEPRGKRGTFALEVGVLDSGI
TDAMFLEMERLIDDAKPLSRHLIGLALHLEVRGTTAIAVGAYMGEEITVYPYSPDPIEVQ
LAQGFYARLHLIESTTIFPLIATN