Protein Info for HSERO_RS04245 in Herbaspirillum seropedicae SmR1

Annotation: C4-dicarboxylate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details PF04290: DctQ" amino acids 21 to 159 (139 residues), 82.7 bits, see alignment E=1.1e-27

Best Hits

KEGG orthology group: K11689, C4-dicarboxylate transporter, DctQ subunit (inferred from 100% identity to hse:Hsero_0845)

Predicted SEED Role

"TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J026 at UniProt or InterPro

Protein Sequence (186 amino acids)

>HSERO_RS04245 C4-dicarboxylate ABC transporter permease (Herbaspirillum seropedicae SmR1)
MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF
VWMAKFGAAYGVRTGIHVGVDVLINRLNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD
IAQHDSTSEVMEVPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLDEE
TSGGKA