Protein Info for HSERO_RS03985 in Herbaspirillum seropedicae SmR1

Annotation: type III secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 45 to 62 (18 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 125 to 152 (28 residues), see Phobius details amino acids 183 to 212 (30 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details PF01311: Bac_export_1" amino acids 14 to 249 (236 residues), 126.9 bits, see alignment E=4.9e-41

Best Hits

KEGG orthology group: K03228, type III secretion protein SctT (inferred from 100% identity to hse:Hsero_0796)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZJ5 at UniProt or InterPro

Protein Sequence (262 amino acids)

>HSERO_RS03985 type III secretion protein (Herbaspirillum seropedicae SmR1)
MPASLLLDLQAVLVTMALVTPRVLVCLVILPGFGLNVLTGLAKNTAAMAISLPAALPTFL
FVQRTAPDMLTTGVMVFKEAMIGLMFGVLMAIPLWVVQSIGSIFDSQRSPIQIQANNATV
DRDASAVGALLLQAVVLVMVQAGMFAGMARILIESYAVWPAFTLAPPFEPGHFDVLVKRF
GELLWYIVVYGAPVLIPLVLIEFGFAIVGVFASNLQVSFASAPVKSLVGLLIMLLYWSTF
SHYVAGDFAHLLDLLTVLMAQR