Protein Info for HSERO_RS03815 in Herbaspirillum seropedicae SmR1

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 982 TIGR01646: Rhs element Vgr protein" amino acids 33 to 339 (307 residues), 138.8 bits, see alignment E=2.7e-44 PF05954: Phage_GPD" amino acids 49 to 367 (319 residues), 252 bits, see alignment E=1.6e-78 PF04717: Phage_base_V" amino acids 487 to 553 (67 residues), 58.2 bits, see alignment 1.7e-19 PF13296: T6SS_Vgr" amino acids 625 to 734 (110 residues), 106.1 bits, see alignment E=2.2e-34 PF10106: DUF2345" amino acids 794 to 950 (157 residues), 130.9 bits, see alignment E=7e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0763)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZG2 at UniProt or InterPro

Protein Sequence (982 amino acids)

>HSERO_RS03815 type VI secretion protein (Herbaspirillum seropedicae SmR1)
MSDLLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLR
LKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSR
VWQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAA
EGLSWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSI
QALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAA
EADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAPRQYAVLSV
MSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAG
VIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASS
AGEIHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIE
DDIDRPVIVGALYNGRGEGAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNA
PTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLG
HLIHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMAL
LKQAALLGKTFNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPE
NSGADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQ
VAGNQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVIS
ANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQM
PNSVCKDCILNAMKQGAPGVLV