Protein Info for HSERO_RS03735 in Herbaspirillum seropedicae SmR1

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 944 TIGR03361: type VI secretion system Vgr family protein" amino acids 61 to 555 (495 residues), 318.7 bits, see alignment E=6.4e-99 PF05954: Phage_GPD" amino acids 62 to 372 (311 residues), 262.1 bits, see alignment E=1.4e-81 TIGR01646: Rhs element Vgr protein" amino acids 63 to 624 (562 residues), 239.9 bits, see alignment E=6e-75 PF04717: Phage_base_V" amino acids 501 to 552 (52 residues), 38.8 bits, see alignment 1.9e-13 PF13296: T6SS_Vgr" amino acids 607 to 712 (106 residues), 85.7 bits, see alignment E=4.6e-28 PF10106: DUF2345" amino acids 762 to 921 (160 residues), 136.3 bits, see alignment E=1.6e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0748)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZE7 at UniProt or InterPro

Protein Sequence (944 amino acids)

>HSERO_RS03735 type VI secretion protein (Herbaspirillum seropedicae SmR1)
MNLSDLPALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIA
GYRLQLSCLSLNADISLRKLLGQPVLLELDTDGGARAFHGHVTACRMEGANGGMARYLLT
IEPWLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLAT
QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQ
TNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAHDKLVLTSRDAP
GQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHYDHDGGDDDQF
VLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSADTQARPVYRNRFE
AIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNRIRVQFHWQRGE
RSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEG
DIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQA
LSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLATTGQG
FELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLE
GESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTAFSAPQLQLSSPAG
IAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETG
MALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLAAQGAWLRLEGGNI
EVHGPGAMEFRASAKELTGPASSGSSASVPAPGPLADCEYKSGA