Protein Info for HSERO_RS03400 in Herbaspirillum seropedicae SmR1

Annotation: cyclopropane-fatty-acyl-phospholipid synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF02353: CMAS" amino acids 108 to 379 (272 residues), 347.5 bits, see alignment E=2.1e-107 PF08123: DOT1" amino acids 155 to 211 (57 residues), 23.4 bits, see alignment 1.5e-08 PF13489: Methyltransf_23" amino acids 156 to 271 (116 residues), 44.6 bits, see alignment E=5.3e-15 PF05175: MTS" amino acids 160 to 238 (79 residues), 23 bits, see alignment E=2.2e-08 PF13847: Methyltransf_31" amino acids 167 to 268 (102 residues), 34.5 bits, see alignment E=6.9e-12 PF08242: Methyltransf_12" amino acids 173 to 267 (95 residues), 48 bits, see alignment E=7e-16 PF13649: Methyltransf_25" amino acids 173 to 266 (94 residues), 61.4 bits, see alignment E=4.6e-20 PF08241: Methyltransf_11" amino acids 173 to 268 (96 residues), 51.5 bits, see alignment E=5.1e-17

Best Hits

KEGG orthology group: K00574, cyclopropane-fatty-acyl-phospholipid synthase [EC: 2.1.1.79] (inferred from 100% identity to hse:Hsero_0681)

Predicted SEED Role

"Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)" (EC 2.1.1.79)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.79

Use Curated BLAST to search for 2.1.1.79

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZ80 at UniProt or InterPro

Protein Sequence (401 amino acids)

>HSERO_RS03400 cyclopropane-fatty-acyl-phospholipid synthase (Herbaspirillum seropedicae SmR1)
VFWEKKLDAWVENIRNVSALPLRLVLWNGQQYDFGSGTPEVTLKVPHASAITSLLTPSLA
NLGEAYVEGKIEVEGKVKSIIQVANSLASNTLKAEGRLGRMVRSVTHTRKRDAEAIQYHY
DVSNDFYKLFLDEHMVYSCAYFENGDEDLATAQIKKIDHILEKIQLRPGQTLLDIGCGWG
ALVLRAAQKYGARCVGVTLSRNQYALARERVEAAGLSDRIEIRLQDYRDVTGSFDRITSV
GMFEHVGIKNLPSYFAQIRKLLADGGMAMNHGITSTDIENGESPYGAGEFIDKYVFPAGE
LPHISTVLKTMQEGGLEAFDVENLRRHYARTCGIWADNFEANTEAIHRVTDEKHYRIWRV
YLAGSAYGFERDWISLYQVVCTKAGRSAQQLPWSRQYIYRR