Protein Info for HSERO_RS03380 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03922: OmpW" amino acids 29 to 245 (217 residues), 95.1 bits, see alignment E=2.8e-31

Best Hits

KEGG orthology group: K07275, outer membrane protein (inferred from 100% identity to hse:Hsero_0677)

Predicted SEED Role

"Outer membrane protein W precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZ76 at UniProt or InterPro

Protein Sequence (245 amino acids)

>HSERO_RS03380 membrane protein (Herbaspirillum seropedicae SmR1)
MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLQPQDSSSGLTKLNGPQAGF
FPNSTSTVSNADTLGIAFTHFFTDNFAVTADLGIPPEFKLKGTGDLQALGELGKAKQWSP
AIVAKWYFGGAQDAFRPFVGAGVTYVWYSDVSLSQAFQNRASLNSGGTATANLSSSWAPV
LTGGATYAFNDRWSASFSVSYIPLKTDADITANPAGAFAGLGPQRYKTTITLDPIVTFLS
VGYKF