Protein Info for HSERO_RS03290 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 11 to 189 (179 residues), 234.3 bits, see alignment E=3.8e-74 PF03741: TerC" amino acids 14 to 188 (175 residues), 167.4 bits, see alignment E=1.4e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0659)

Predicted SEED Role

"Membrane protein TerC, possibly involved in tellurium resistance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYL8 at UniProt or InterPro

Protein Sequence (241 amino acids)

>HSERO_RS03290 membrane protein (Herbaspirillum seropedicae SmR1)
MEFLANLNWIAVVQIILIDILLGGDNAIVIALACRNLPDKLRMKGIVWGTVGAIAIRIAL
ISFAVTMLQLPYLKLVGGVLLLWIGIKLLNEDEDHAEVDGSDRLWGAVKTVIVADLVMSL
DNVIAIASAAEQAAGEHRLMLVVFGIVVSIPIIVWGSTLVLKLMERFPVIVTLGAALLGY
IAGGMIFSDGAIQGLLRDFIDQTEFLVPGASVHLSLPGLVGALGVVLIGLSLKRRRQQLA
G