Protein Info for HSERO_RS03250 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 53 to 76 (24 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 68 to 235 (168 residues), 102.7 bits, see alignment E=1.1e-33

Best Hits

Swiss-Prot: 41% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to hse:Hsero_0650)

MetaCyc: 41% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYK9 at UniProt or InterPro

Protein Sequence (251 amino acids)

>HSERO_RS03250 ABC transporter permease (Herbaspirillum seropedicae SmR1)
GWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGF
VIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAI
GAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAW
MFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGWR
EARRQSSQQTS