Protein Info for HSERO_RS03060 in Herbaspirillum seropedicae SmR1

Annotation: DNA repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 TIGR00634: DNA repair protein RecN" amino acids 1 to 547 (547 residues), 519.5 bits, see alignment E=7.2e-160 PF02463: SMC_N" amino acids 2 to 506 (505 residues), 70.8 bits, see alignment E=1.8e-23 PF13476: AAA_23" amino acids 5 to 192 (188 residues), 48.4 bits, see alignment E=2.7e-16

Best Hits

Swiss-Prot: 41% identical to RECN_VIBCH: DNA repair protein RecN (recN) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 100% identity to hse:Hsero_0612)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYH1 at UniProt or InterPro

Protein Sequence (548 amino acids)

>HSERO_RS03060 DNA repair protein (Herbaspirillum seropedicae SmR1)
MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAA
KADVSADFSATPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVG
EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR
NVLLERERLEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISESESPI
LSQLSSITQKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE
ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQK
LSKARAKAAAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR
ALAKVASGGELARISLAISVIASAATSIPTLIFDEVDSGIGGAVAEVVGRLLKRLGQDRQ
VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK
HARELLAS