Protein Info for HSERO_RS02835 in Herbaspirillum seropedicae SmR1

Annotation: FMN-dependent NADH-azoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 PF03358: FMN_red" amino acids 3 to 151 (149 residues), 43.6 bits, see alignment E=2.4e-15 PF02525: Flavodoxin_2" amino acids 3 to 198 (196 residues), 156.1 bits, see alignment E=9.9e-50

Best Hits

Swiss-Prot: 72% identical to AZOR_AZOC5: FMN-dependent NADH-azoreductase (azoR) from Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571)

KEGG orthology group: K01118, FMN-dependent NADH-azoreductase [EC: 1.7.-.-] (inferred from 100% identity to hse:Hsero_0566)

Predicted SEED Role

"(Acyl-carrier-protein) phosphodiesterase( EC:3.1.4.14 )"

Isozymes

Compare fitness of predicted isozymes for: 1.7.-.-

Use Curated BLAST to search for 1.7.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYC5 at UniProt or InterPro

Protein Sequence (205 amino acids)

>HSERO_RS02835 FMN-dependent NADH-azoreductase (Herbaspirillum seropedicae SmR1)
MTHVLLITSSPRGADSLSSRFATEIAEGIKASSAGTLKVRDLIADPLPHITSAYIQGRLT
APENRTPDQVAAVALAQELVDELKAADIVVIGSGMINFGPSSQLKAWFDHVTWPSVTFAY
DDNGPKGLLTGKKTYLVAAAGGVFSEGIWAAFDFQSNYLLHLLSFIGLSDVEMVCVEGTV
FGPDAAKAAIANTEAAVQVLLNKAA