Protein Info for HSERO_RS02185 in Herbaspirillum seropedicae SmR1

Annotation: DeoR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 PF04198: Sugar-bind" amino acids 58 to 317 (260 residues), 205.6 bits, see alignment E=3.8e-65

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0439)

Predicted SEED Role

"Transcriptional regulator of mannitol utilization, DeoR family protein" in subsystem Mannitol Utilization or Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IX89 at UniProt or InterPro

Protein Sequence (320 amino acids)

>HSERO_RS02185 DeoR family transcriptional regulator (Herbaspirillum seropedicae SmR1)
MSSSTSKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV
SSCLELAQGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLV
VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP
APRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAEL
QRQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALR
GGWLTGLVTDEVCARHALQD