Protein Info for HSERO_RS01370 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 57 to 80 (24 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 121 to 147 (27 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 186 to 210 (25 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details amino acids 260 to 278 (19 residues), see Phobius details amino acids 290 to 307 (18 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 346 to 370 (25 residues), see Phobius details amino acids 379 to 399 (21 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 250 (221 residues), 64.2 bits, see alignment E=5.2e-22 amino acids 232 to 398 (167 residues), 53.4 bits, see alignment E=1e-18

Best Hits

Swiss-Prot: 45% identical to YFCJ_ECO57: Uncharacterized MFS-type transporter YfcJ (yfcJ) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0278)

Predicted SEED Role

"Xanthine transporter,putative" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IW06 at UniProt or InterPro

Protein Sequence (405 amino acids)

>HSERO_RS01370 MFS transporter (Herbaspirillum seropedicae SmR1)
MSASSTDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKDALGMNAT
VVGVVVGAQFAAALLSRAWAGNFADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWS
VAVLLLGRVVLALGESLMVTGAMSWGIGLVGPQHGGKVMAWLGIALYAAFGAGAPLGVAI
NQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVG
FGVITAFIALLFAARAWGNAALAFSAFGAAFILARLLFAHLPDKLGGARVALVCVLIEAA
GQLLIWQADAAHWAYLGAALTGFGYSLAFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSL
GITSPLAGVLASHAGVQSIYLAGAVTVGLSVLVALSLLHSVKMGD