Protein Info for HSERO_RS01325 in Herbaspirillum seropedicae SmR1

Annotation: cation/multidrug efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1047 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 340 to 359 (20 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 397 to 417 (21 residues), see Phobius details amino acids 430 to 456 (27 residues), see Phobius details amino acids 468 to 491 (24 residues), see Phobius details amino acids 543 to 565 (23 residues), see Phobius details amino acids 878 to 897 (20 residues), see Phobius details amino acids 904 to 924 (21 residues), see Phobius details amino acids 930 to 951 (22 residues), see Phobius details amino acids 976 to 995 (20 residues), see Phobius details amino acids 1005 to 1028 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 13 to 1027 (1015 residues), 527.2 bits, see alignment E=3.8e-162

Best Hits

KEGG orthology group: None (inferred from 72% identity to bgl:bglu_1g16160)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVZ6 at UniProt or InterPro

Protein Sequence (1047 amino acids)

>HSERO_RS01325 cation/multidrug efflux protein (Herbaspirillum seropedicae SmR1)
MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA
TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK
VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAK
IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ
FDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMRANGQPVLGIGVTMQPGGDVI
RLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG
IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE
QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW
LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC
VAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM
EALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP
LRRQFSGVRTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRATNIQFD
WDEPAQRSVSFEIDQKRAAQLGLTSQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRS
ERVDPARLATLSMPTANGPVPLATLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGID
VTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF
GRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA
GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY
LPALYALCYRVKPDETHHRDTAAQGSH