Protein Info for HSERO_RS00420 in Herbaspirillum seropedicae SmR1

Annotation: nitrogen regulatory protein P-II 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 PF00543: P-II" amino acids 1 to 108 (108 residues), 154.7 bits, see alignment E=4.7e-50

Best Hits

Swiss-Prot: 76% identical to GLNB_RHORT: Nitrogen regulatory protein P-II (glnB) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)

KEGG orthology group: K04752, nitrogen regulatory protein P-II 2 (inferred from 100% identity to hse:Hsero_0084)

MetaCyc: 68% identical to nitrogen regulatory protein PII-2 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Nitrogen regulatory protein P-II" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITX3 at UniProt or InterPro

Protein Sequence (112 amino acids)

>HSERO_RS00420 nitrogen regulatory protein P-II 1 (Herbaspirillum seropedicae SmR1)
MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL