Protein Info for HSERO_RS00370 in Herbaspirillum seropedicae SmR1

Annotation: peptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 668 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 345 to 372 (28 residues), see Phobius details amino acids 382 to 403 (22 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 456 to 477 (22 residues), see Phobius details amino acids 493 to 513 (21 residues), see Phobius details amino acids 520 to 539 (20 residues), see Phobius details amino acids 551 to 576 (26 residues), see Phobius details amino acids 604 to 627 (24 residues), see Phobius details amino acids 644 to 662 (19 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 5 to 621 (617 residues), 375 bits, see alignment E=8.2e-116 TIGR00733: oligopeptide transporter, OPT family" amino acids 11 to 625 (615 residues), 712.5 bits, see alignment E=4e-218 PF03169: OPT" amino acids 11 to 623 (613 residues), 364.4 bits, see alignment E=6.6e-113

Best Hits

Swiss-Prot: 59% identical to Y561_HAEIN: Putative oligopeptide transporter HI_0561 (HI_0561) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0075)

Predicted SEED Role

"oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITW4 at UniProt or InterPro

Protein Sequence (668 amino acids)

>HSERO_RS00370 peptide transporter (Herbaspirillum seropedicae SmR1)
MQNDNQAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFA
NANILENNMVQTQASAAGTLSSVIFILPGLLMMGHWQGFPFLQTLGICAAGGMLGVMFSI
PLRRVMVVQGELPYPEGVAAAEILRVGSADADGGEESRRGLRDILFGGALAAGFSVAASG
LKVFAESMSLWFAAGASAVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT
AVTPHAADVSLADFANGLWKSQVRFIGAGMIGVAAIWTLATLFGPMVQGVKASLSTLARR
QQGSTERTDQDMSPRWIVIISLAMIGLLAVVFASFLAGAPVSPALFAGLVVYAVVFAFVF
GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSLLLLASGMVDTLLATPEGGKLAIAIA
LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGALVIPPVLTLLYNAY
GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLTVGVGLGILLIVIDWLLA
RRGGVARLPVLAVGIGIYLPPVVSSALFVGALLGWFIERALRRRALAAGANVEAYADKPR
QRGILVASGLIVGESLVGVVLAGVIGFTGKDAPLALVSGSFESIGQWLGLAAFALILLAF
ARRIMPAR