Protein Info for HSERO_RS00280 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 transmembrane" amino acids 38 to 58 (21 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 99 to 272 (174 residues), 50.6 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to hse:Hsero_0055)

Predicted SEED Role

"Taurine transport system permease protein TauC" in subsystem Taurine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITU4 at UniProt or InterPro

Protein Sequence (288 amino acids)

>HSERO_RS00280 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MAQTPPIRDEYEIPLTPLPGLVLQRQFSLPQRLWQQGWVRKGAILLLLALVWEGVARWQN
NDLLLPSFLQTAQAFIDGLRSGELFGKTWLSLQVLLKAYVLGIVAAFALTTLAVSTQFGR
DLLGTLTSMFNPLPAIALLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTL
RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW
YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR