Protein Info for HSERO_RS00205 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 transmembrane" amino acids 68 to 86 (19 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 120 to 138 (19 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 420 to 444 (25 residues), see Phobius details amino acids 464 to 490 (27 residues), see Phobius details amino acids 500 to 520 (21 residues), see Phobius details amino acids 531 to 552 (22 residues), see Phobius details PF04632: FUSC" amino acids 409 to 704 (296 residues), 62.6 bits, see alignment E=6.2e-21 PF06081: ArAE_1" amino acids 415 to 547 (133 residues), 28.5 bits, see alignment E=3e-10 PF13515: FUSC_2" amino acids 422 to 546 (125 residues), 90.5 bits, see alignment E=2e-29 PF11744: ALMT" amino acids 435 to 554 (120 residues), 24.3 bits, see alignment E=2.8e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0041)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITT0 at UniProt or InterPro

Protein Sequence (711 amino acids)

>HSERO_RS00205 membrane protein (Herbaspirillum seropedicae SmR1)
MPPLLTPRFSQYFSLYRLLLLSHCRRCRTRVERWRAQFPLRHANLSEGLRAACSAAAMLL
LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAASAASLSVEL
GWLTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPVILWPLSQSHVLIYFGGCLW
ALLLGLTVWRIHPFGPARQAVARAYGTLAELASIAAANGLDDPAYAMHAADLAAHARRHA
RFDIAAARRALQAVAVERTESRRLYDNLLVRLARADDLLDGVTLLVDLQLTHYQEPRARQ
RTTRVLAGIARQLQAMQAAMSQGEAIAADEDARIMARLRQLVARLPSGTGRLLQQVHTPL
AVGSDDPAGLKLMARSAAPAPALPAILLHRVRAWWRKAASHAATGSAEWHHAWRCAAAAG
ATYLIVHLLELPFGYWATMATMLVMQPSIAESWSRSMERAVGSVVGGVLAVVLCLVVHSP
LALALLVFPLTVLTMALKPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIG
AVVAVLASYLFWPRRHPEDPQAQLQRMAQLNLAYLIEALATPAAPPMATLHAHRRAACVA
NVEAGLLLQRVARERGWPERDHGRGRTAVALSRRLAAAASHIWAHPQAASPELLGWLRAL
AAALSAHQSRALHDLLRHRPAPMHLAQAAAVETACLLVATLDADTAMPAGK