Protein Info for HSERO_RS00090 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 400 to 422 (23 residues), see Phobius details PF04286: DUF445" amino acids 44 to 417 (374 residues), 370.4 bits, see alignment E=9.2e-115

Best Hits

Swiss-Prot: 51% identical to YJIN_ECOLI: Uncharacterized protein YjiN (yjiN) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0018)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITQ7 at UniProt or InterPro

Protein Sequence (425 amino acids)

>HSERO_RS00090 hypothetical protein (Herbaspirillum seropedicae SmR1)
MDKQDALRRTKRLAFICLLAAAALFIIASLAPPSWWSGLLRAMAEAAMVGALADWFAVSA
LFRRIPLPLLSRHTDIIARNKERIAHNLAVFVEEKFLSPQSLAALIRRHDPAQHLARWMA
LPENAARLGGYMARAVGGVLMLTDDRRIQSFLRQGLHAAVGKLDLSHSLAAVLDTLTLDG
RHQQLLDRAIIELAALLNREQTRIFIAERMVDWLRQEYPKIEKILPSQWIGEKSAQTLAD
ILDKLLSGIAEDPQHSLRRAFDEQVARFIVRLKEDPALRERADTFKRELLEGEAVHAYVG
GLWDSLRQWLRADLERSDSVLRRHAQDATQWIGQALQDDAALRASLNTHLEHAIASLSPE
LAQLLSRHISDTIRQWETVELSRQVELNIGRDLQFIRINGTLVGALIGAVLFGLSALMQW
LVHGV