Protein Info for HSERO_RS00050 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 74 (29 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details amino acids 329 to 347 (19 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details amino acids 398 to 415 (18 residues), see Phobius details PF00083: Sugar_tr" amino acids 12 to 213 (202 residues), 87 bits, see alignment E=1.4e-28 amino acids 233 to 410 (178 residues), 48.9 bits, see alignment E=4.8e-17 PF07690: MFS_1" amino acids 42 to 282 (241 residues), 64.3 bits, see alignment E=9.8e-22 amino acids 249 to 415 (167 residues), 48.4 bits, see alignment E=6.8e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0011)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITQ0 at UniProt or InterPro

Protein Sequence (437 amino acids)

>HSERO_RS00050 membrane protein (Herbaspirillum seropedicae SmR1)
VQPQLNKQRQVIAAIVGNALEWYDFIVYGFFSAIIARLFFPADNEYTSLLVALATFGIGF
FMRPVGGVLLGLYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVVARML
QGFATGGEYSSSTAFLVESAPAHKRGLYGSWQLVGQCLAVFCGAGMGALVTRNLSPEALD
SWGWRLPFVLGLLIGPVGLWIRRHMHETDDFLESANKPNAAPIKLLDVVKTNLRGVLVSM
GQVINGTVAFYVVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTAVIPFAGALSDRLGRR
TVLLYSSLAFLLMVYPLFVWVSAAPSLPRLLVMQVLLCIVIGANFGPMPTALSEQFPTRV
RSTGLAVAYNLAAMLFGGFAPFIVTWLTKTSGSPVAPAWYVLFAACIGVSAAWAMRDQSP
AAKNRQTEVFAGIGEIK