Gene info for HMPREF1078_RS20075 in Parabacteroides merdae CL09T00C40

Annotation: helix-turn-helix domain containing protein
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH976529, - strand, nucleotides 259,582 to 259,707
See nucleotide sequence around HMPREF1078_RS20075 or for all of scaffold NZ_JH976529

Nearby Genes

500 ntHMPREF1078_RS15695 and HMPREF1078_RS15700 are separated by 23 nucleotidesHMPREF1078_RS15700 and HMPREF1078_RS15705 are separated by 12 nucleotidesHMPREF1078_RS15705 and HMPREF1078_RS15710 are separated by 38 nucleotidesHMPREF1078_RS15710 and HMPREF1078_RS15715 are separated by 39 nucleotidesHMPREF1078_RS15715 and HMPREF1078_RS20075 are separated by 45 nucleotidesHMPREF1078_RS20075 and HMPREF1078_RS15720 are separated by 241 nucleotidesHMPREF1078_RS15720 and HMPREF1078_RS15725 are separated by 25 nucleotidesHMPREF1078_RS15725 and HMPREF1078_RS15735 are separated by 766 nucleotidesHMPREF1078_RS15735 and HMPREF1078_RS15740 are separated by 9 nucleotidesHMPREF1078_RS15740 and HMPREF1078_RS15745 are separated by 63 nucleotides HMPREF1078_RS15695: HMPREF1078_RS15695 - hypothetical protein, at 253,173 to 253,466 _RS15695 HMPREF1078_RS15700: HMPREF1078_RS15700 - efflux RND transporter permease subunit, at 253,490 to 256,618 _RS15700 HMPREF1078_RS15705: HMPREF1078_RS15705 - efflux RND transporter periplasmic adaptor subunit, at 256,631 to 257,656 _RS15705 HMPREF1078_RS15710: HMPREF1078_RS15710 - TolC family protein, at 257,695 to 259,077 _RS15710 HMPREF1078_RS15715: HMPREF1078_RS15715 - TetR/AcrR family transcriptional regulator, at 259,117 to 259,536 _RS15715 HMPREF1078_RS20075: HMPREF1078_RS20075 - helix-turn-helix domain containing protein, at 259,582 to 259,707 _RS20075 HMPREF1078_RS15720: HMPREF1078_RS15720 - helix-turn-helix transcriptional regulator, at 259,949 to 260,857 _RS15720 HMPREF1078_RS15725: HMPREF1078_RS15725 - DUF308 domain-containing protein, at 260,883 to 261,401 _RS15725 HMPREF1078_RS15735: HMPREF1078_RS15735 - CTP synthase, at 262,168 to 263,775 _RS15735 HMPREF1078_RS15740: HMPREF1078_RS15740 - membrane protein insertase YidC, at 263,785 to 265,701 _RS15740 HMPREF1078_RS15745: HMPREF1078_RS15745 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 265,765 to 266,550 _RS15745
Locus Name Description Strand Phenotype
HMPREF1078_RS15695 HMPREF1078_RS15695 hypothetical protein - sig.
HMPREF1078_RS15700 HMPREF1078_RS15700 efflux RND transporter permease subunit - insig.
HMPREF1078_RS15705 HMPREF1078_RS15705 efflux RND transporter periplasmic adaptor subunit - cofit
HMPREF1078_RS15710 HMPREF1078_RS15710 TolC family protein - cofit
HMPREF1078_RS15715 HMPREF1078_RS15715 TetR/AcrR family transcriptional regulator - insig.
HMPREF1078_RS20075 HMPREF1078_RS20075 helix-turn-helix domain containing protein - insig.
HMPREF1078_RS15720 HMPREF1078_RS15720 helix-turn-helix transcriptional regulator + strong
HMPREF1078_RS15725 HMPREF1078_RS15725 DUF308 domain-containing protein - insig.
HMPREF1078_RS15735 HMPREF1078_RS15735 CTP synthase + no data
HMPREF1078_RS15740 HMPREF1078_RS15740 membrane protein insertase YidC + no data
HMPREF1078_RS15745 HMPREF1078_RS15745 3-deoxy-manno-octulosonate cytidylyltransferase - no data

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