Protein Info for HMPREF1078_RS17585 in Parabacteroides merdae CL09T00C40

Annotation: C69 family dipeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03577: Peptidase_C69" amino acids 34 to 463 (430 residues), 181.6 bits, see alignment E=1.3e-57

Best Hits

KEGG orthology group: None (inferred from 52% identity to bvu:BVU_3874)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>HMPREF1078_RS17585 C69 family dipeptidase (Parabacteroides merdae CL09T00C40)
MKKKVYTAFICLCCAVVSLFAQERVVELTNPNESCTSIAAGKLATTDGSVMTSQTCDGTS
RTWMEVVPAQNWPDTAKLDLYWDLRHTESKNDRLGVKLKGSIPQVPYTFAYLNTGYPCMN
EKQLAMGETTIVGRKELRNPKGLFHIEDLQGIALQRCSTAREAVLLMGRLAEQYGYRDGG
ECLTVADKRELWFFEITGAGSEDMGALWVARRIPDDHVTVSANTPRISDVDFGDKDNYMY
SEGLKEKARKLGYWDGKEPFKFWKVIHETGKKPFTIRDFFVLKTLAPSLNLTMDMEELPL
SVKPEQNVSLADMNRLLRETYEGTEWDMTKDMMVTKKIKDKDGTERDTIYKSPLAQNWMT
NDMFEFLNAGRGEKKIEKQRTISVVWCAYSFVIQCRDWLPDEVGGVCWWSEDNPGESPRV
PLFAGMTDVPESFKVCGHKRYRPDAALWTYRRTNRLAQVSWGHGRKLIEPAVLSFEQKAA
DEMPLIENKVSALIREGKKDEAQAYLTRYSFDFIYSTLRCWEEMEGQLWHKFGRGF