Protein Info for HMPREF1078_RS17355 in Parabacteroides merdae CL09T00C40

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 224 to 252 (29 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details amino acids 321 to 349 (29 residues), see Phobius details PF01594: AI-2E_transport" amino acids 18 to 353 (336 residues), 181.6 bits, see alignment E=1.2e-57

Best Hits

KEGG orthology group: None (inferred from 80% identity to pdi:BDI_3359)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>HMPREF1078_RS17355 AI-2E family transporter (Parabacteroides merdae CL09T00C40)
MNPLFDKPFTFDRVARILFGLAVISGIIYLIAVLRNALLPFLIAWLLAYMMQPFVKFFQY
KVKLKSRLLSILAVLVSTLLVISLVGVVIVPSVTQEFNRTLELMQEHNSGYGHIPMIPQS
WAEYLEKNIDPDQLAQLLSKENIEKAVKQIAPKMWIVLTNTFSILFSITIVFVIFLYFIF
ILLDYERIVNGWIRLIPERYRPFVQGLADDVEYSMNRYFRGQSLIALCVGILFAIGFKIV
GFPLAVILGLFIGFLNLIPYMQTIGIIPMILLSLLKAAETGENFWLIFGSGILVLCIVQC
IQDLYLTPRIMGKAMGLNPAIILLSLSIWGTLLGFIGLIIALPLTTLFLSYYKRFILMEE
DQSLVEKHELSKVQKKKTFPKE