Protein Info for HMPREF1078_RS16845 in Parabacteroides merdae CL09T00C40

Annotation: 50S ribosomal protein L17

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 TIGR00059: ribosomal protein bL17" amino acids 7 to 117 (111 residues), 132.1 bits, see alignment E=5.3e-43 PF01196: Ribosomal_L17" amino acids 20 to 116 (97 residues), 125.8 bits, see alignment E=5.1e-41

Best Hits

Swiss-Prot: 87% identical to RL17_PARD8: 50S ribosomal protein L17 (rplQ) from Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)

KEGG orthology group: K02879, large subunit ribosomal protein L17 (inferred from 87% identity to pdi:BDI_2353)

Predicted SEED Role

"LSU ribosomal protein L17p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (163 amino acids)

>HMPREF1078_RS16845 50S ribosomal protein L17 (Parabacteroides merdae CL09T00C40)
MRHNKKINHLGRTNTHRNAMLSNMACSLIKHKRIFTTVAKAKALRKFVEPLITKSKEDTT
HSRRVVFSNLQDKYAVTELFKEVSQKIGDRPGGYTRILKTGNRLGDNAAMCFIELVDYNE
NMLKTATAKKATKTRRSRKKSTAAAETEAPVAEAPVAEEKAAE