Protein Info for HMPREF1078_RS16215 in Parabacteroides merdae CL09T00C40

Annotation: preprotein translocase subunit YajC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 103 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details PF02699: YajC" amino acids 19 to 93 (75 residues), 105.6 bits, see alignment E=4.8e-35 TIGR00739: preprotein translocase, YajC subunit" amino acids 19 to 94 (76 residues), 91.4 bits, see alignment E=1.5e-30

Best Hits

Swiss-Prot: 34% identical to YAJC_BUCAP: Sec translocon accessory complex subunit YajC (yajC) from Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

KEGG orthology group: K03210, preprotein translocase subunit YajC (inferred from 85% identity to pdi:BDI_1859)

Predicted SEED Role

"Preprotein translocase subunit YajC (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (103 amino acids)

>HMPREF1078_RS16215 preprotein translocase subunit YajC (Parabacteroides merdae CL09T00C40)
MSLLTILLQAAGGSQQWSGILMMVVIVAIFYFFMIRPQQKKQKEIQKAREALKAGDKVIT
AGGIYGKIKEIGDTYMLIEISDGVRIRVDKTSVFASVADAQQK