Protein Info for HMPREF1078_RS15435 in Parabacteroides merdae CL09T00C40

Annotation: RnfABCDGE type electron transport complex subunit G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 29 to 29 (1 residues), see Phobius details TIGR01947: electron transport complex, RnfABCDGE type, G subunit" amino acids 13 to 189 (177 residues), 160.8 bits, see alignment E=2e-51 PF04205: FMN_bind" amino acids 98 to 186 (89 residues), 68.7 bits, see alignment E=2.9e-23

Best Hits

KEGG orthology group: K03612, electron transport complex protein RnfG (inferred from 80% identity to pdi:BDI_0513)

Predicted SEED Role

"Electron transport complex protein RnfG" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>HMPREF1078_RS15435 RnfABCDGE type electron transport complex subunit G (Parabacteroides merdae CL09T00C40)
MAKLKSTLPNMFLSLTIICVVAGAILAGVNMYTTGPIAATKAAALEAAIKAVTPAFDNKP
TEEAYMAVTADGDSLKIYPAKQDGKFVGAAVESNTMKGFGGEIRVIVGFDTEGKLLNYSV
LQHAETPGLGAKMQEWFRTDKNRQSVLGRNLSDGELKVTKDGGDVDAITASTITSRAFLN
AVNRAYSAFSGADGLTGATTSSDNTTKEGGNDNE